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Flight Dynamics and Control Toolbox
A Matlab/Simulink toolbox for aircraft dynamics research and flight control system design. Features a detailed flight model, autopilot simulation, and user manual.
http://www.dutchroll.com/

The MathWorks
Developers of MATLAB, Simulink and Stateflow. The MathWorks offers a set of integrated products for data analysis, visualization, application development, simulation, design, and code generation.
http://www.mathworks.com/

MOSEK Optimization Toolbox
Optimization software for linear and convex optimization problems.
http://www.mosek.com/

MATLAB
MATLAB is an integrated technical computing environment that combines numeric computation, graphics and visualization, and a high-level programming language.
http://www.mathworks.com/products/matlab

Data Visualization Toolbox
MATLAB software implementing the analytical and graphical methods presented in William S. Cleveland's Visualizing Data.
http://www.datatool.com/Dataviz_home.htm

Kriging Toolbox
Matlab based toolbox written by Caroline Lafleur and Yves Gratton, INRS-Oceanologie, Universite du Quebec Rimouski.
http://globec.whoi.edu/software/kriging/V3/intro_v3.html

Constellation Toolbox for MATLAB
A Toolbox designed for analysis of GPS, GLONASS, and user defined constellations for navigation or communcications. Satellite visibility, ground station contacts, signal propagation modeling for GPS and GLONASS, and orbit animations. We also specialize in consulting for constellation design, satellite mission analysis, and GPS navigation.
http://www.constell.org/

WaveWarp Audio Toolbox for MATLAB
Modular PC-based real-time audio processing toolkit with seamless integration to the MATLAB environment allowing rapid prototyping of signal processing algorithms at pro-audio sample rates. No peripheral DSP hardware required.
http://www.soundslogical.com/

Time Frequency Toolbox
Developed for the analysis of non-stationary signals using time-frequency distributions.
http://www-isis.enst.fr/Applications/tftb/iutsn.univ-nantes.fr/auger/tftb.html

MATLAB FAQ
Frequently asked questions in comp.soft-sys.matlab.
http://www.mit.edu/~pwb/cssm/index.html

MPEG for MATLAB
MPEG compression algorithms for audio.
http://www.cl.cam.ac.uk/~fapp2/software/mpeg/

PLS_Toolbox
A chemometric toolbox for chemical engineers and analytical chemists to explore their data and build predictive modelsoutines. It is named after the Partial Least Squares (PLS) regression method, the standard calibration method in many chemical applications. (not free)
http://www.eigenvector.com/PLS_Toolbox.html

MATLAB at MIT
MATLAB on Athena. Where to find documentation, training, and help.
http://web.mit.edu/matlab/www/home.html

Genetic and Evolutionary Algorithm Toolbox
[commercial]
http://www.geatbx.com/

Frequency Domain System Identification Toolbox
[commercial]
http://elecwww.vub.ac.be/fdident/

FEMLAB - Multiphysics in MATLAB
[commercial] A powerful interactive environment for modeling and solving scientific and engineering problems involving partial differential equations.
http://www.femlab.com/

Global Optimization by Multilevel Coordinate Search
MCS is a MATLAB program for bound constrained global optimization using function values only, based on a multilevel coordinate search that balances global and local search.
http://solon.cma.univie.ac.at/~neum/software/mcs/

LOBPCG Method
Locally Optimal Block Preconditioned Conjugate Gradient.
http://www-math.cudenver.edu/~aknyazev/software/CG/

EasyKrig2.0
The GLOBEC Kriging Software Package for MATLAB
http://globec.whoi.edu/software/kriging/easy_krig/easy_krig.html

Vision for MATLAB
VFM allows MATLAB to access video source devices such as frame-grabbers boards and USB cameras.
http://www.sys.uea.ac.uk/~fuzz/vfm/default.html

The Statistics Toolbox
The Statistics Toolbox for MATLAB includes functions for Probability distributions, Parameter estimations, Descriptive Statistics, Multivariate statistics, Linear and nonlinear modeling, Statistical plotting, Statistical Process Control, Design of Experiments, Hypothesis Tests, Cluster Analysis
http://www.mathworks.com/products/statistics

DDE-BIFTOOL
A MATLAB package for bifurcation analysis of delay differential equations.
http://www.cs.kuleuven.ac.be/~koen/delay/ddebiftool.shtml

Control Tutorials for MATLAB
Tutorials about using MATLAB for the analysis and design of automatic control systems.
http://www.engin.umich.edu/group/ctm/

MATLAB In-House Tutorials
Provided by the U.S. Naval Academy can be used to learn or review Matlab commands. Site last updated 1996.
http://web.usna.navy.mil/~mecheng/DESIGN/CAD/MATLAB/usna.html

MATLAB Summary and Tutorial
University of Florida: gigantic Matlab Tutorial.
http://www.math.ufl.edu/help/matlab-tutorial/

CSIRO matlab/netCDF interface
Used in a to retrieve data from, and information about, existing netCDF files.
http://www.marine.csiro.au/sw/matlab-netcdf.html

Polynomial Toolbox
A package for polynomials, polynomial matrices and their application in systems, signals and control. [commercial]
http://www.polyx.com/

Probabilistic Model Toolkit
[free] Functions for inference and learning in various static and dynamic probabilistic models such as hidden Markov models, linear dynamic systems, Gaussian mixture models, and factor analyzers.
http://crl.research.compaq.com/projects/vision/pmt.html

Spatial and Geometric Analysis Toolbox
It doesn't look like this has been updated for a long time. Will only run under MATLAB 4.
http://puddle.mit.edu/~glenn/kirill/saga.html

BrainStorm
A toolbox dedicated to Magnetoencephalography (MEG) and Electroencephalography (EEG) data visualization and processing.
http://neuroimage.usc.edu/brainstorm/

Tomlab
[commercial] Provides state-of-the-art optimization, with fast and robust solutions to sparse and dense linear, quadratic and nonlinear programming problems.
http://tomlab.biz/

QMG project
The QMG package generates finite element meshes in two and three dimensions. It is free software distributed as C++ source code with MATLAB and Tck/Tk interfaces.
http://www.cs.cornell.edu/home/vavasis/qmg-home.html

Bayes Net Toolbox
Bayes Net Toolbox for MATLAB 5.
http://www.cs.berkeley.edu/~murphyk/Bayes/bnt.html

Hidden Markov Model (HMM) Toolbox
Written by Kevin Murphy [free].
http://www.cs.berkeley.edu/~murphyk/Bayes/hmm.html

SDC Morphology Toolbox for MATLAB
[commercial] Gray-scale morphological tools for image segmentation, non-linear filtering, pattern recognition and image analysis.
http://www.mmorph.com/

MatLinks Software Network
Providing the MatLinks ToolChest and Chorus ToolBox, peer-reviewed GNU Octave and Matlab/Simulink toolsuites under active development by scientists and engineers around the world.
http://matlinks.net/

Automatic Differentiation in MATLAB
Enables you to differentiate target functions defined via M-files.
http://www.cs.cornell.edu/home/verma/AD

File Exchange
An area on MATLAB Central, it publishes contributions from the user community.
http://www.mathworks.com/matlabcentral/fileexchange/

Growing Cell Structure Visualisation Toolbox
[free]
http://www.shef.ac.uk/~path/GCSVIS/

PyMat -- Python to MATLAB Interface
Free download for Unix and Win32 versions.
http://claymore.engineer.gvsu.edu/~steriana/Python/pymat.html

GABLE: A MATLAB Geometric Algebra Tutorial
A tutorial for learning Geometric Algebra, aimed at the sophomore college level.
http://www.cgl.uwaterloo.ca/~smann/GABLE/

MexEPS
[free] A mex-file interface between EPIC System and MATLAB which enables MATLAB users to access EPIC System data file and many other netCDF file conventions, such as those produced by Ferret, and WHOI, efficiently from within MATLAB.
http://www.pmel.noaa.gov/epic/software/mexeps.htm

RIOTS
A MATLAB toolbox for solving optimal control problems.
http://www.accesscom.com/~adam/RIOTS/

Engineering Vibration Toolbox
Including single degree of freedom response, response spectrum, finite elements, numerical integration, modal analysis and phase plane analysis.
http://www.cs.wright.edu/people/faculty/jslater/vtoolbox/vtoolbox.html

Mocha, MATLAB via the WWW
[free] Using MATLAB and a browser together as clients for graphical applications.
http://puddle.mit.edu/~glenn/mocha.html

KFtools for MATLAB
Some simple, fast image processing functions for MATLAB.
http://www.dip.ee.uct.ac.za/~kforbes/KFtools/KFtools.html

MATLAB Mailing List
A Yahoo Group to facilitate the exchange of information between MATLAB Users.
http://groups.yahoo.com/group/matlab

Math Forum Discussions: comp.soft-sys.matlab
Users of the software package MATLAB may share tips and advice at the comp.soft-sys.matlab discussion list.
http://mathforum.org/epigone/comp.soft-sys.matlab/

FastICA for MATLAB
Implements the fast fixed-point algorithm for independent component analysis and projection pursuit.
http://www.cis.hut.fi/projects/ica/fastica/

Chemometrics Toolbox
The Chemometrics Toolbox provides more than 40 specialized MATLAB functions for chemometric calibration, including quantitative and qualitative analysis using powerful methods such as Multiple Linear Regression, Principal Component Regression, and Partial Least-Squares in latent variables.
http://www.chemometrics.com/software/chemometrics.html

UNH Math Dept's MATLAB Tutorials
MATLAB Tutorial Information
http://spicerack.sr.unh.edu/~mathadm/tutorial/software/matlab/

ADAPTx
[commercial] Automated multivariable system identification and time series analysis software.
http://www.adaptics.com/

Factor Analysis Toolbox
The Factor Analysis Toolbox provides a family of specialized MATLAB functions for factor analysis techniques. It is designed to help you learn the principles of target factor analysis and to provide the capabilities necessary for tackling real research and modelling problems.
http://www.chemometrics.com/software/fatb.html

Neural Network Toolbox Tutorial
A tutorial on how to construct custom neural networks starting from an empty network object.
http://carol.wins.uva.nl/~portegie/matlab/nnt/

Statistical Pattern Recognition Toolbox
Focuses on the linear discriminant function, including its generalization to quadratic discriminant function by non-linear data mapping, unsupervised learning algorithms and minimax learning algorithms. [free]
http://cmp.felk.cvut.cz/~xfrancv/stprtool/index.html

Multiflash for MATLAB
[commercial] Provides physical and thermodynamic properties, with multiphase and multicomponent equilibrium calculations, for a wide range of substances.
http://www.khace.com/Products/Multiflash/index.htm

MATLAB Central
A community site for MATLAB and Simulink users, including file exchange and newsgroup access.
http://www.mathworks.com/matlabcentral/

Spectral Methods in MATLAB
Forty short m-files which do everything from demonstrating spectral accuracy on functions of varying smoothness to solving the Poisson, biharmonic, Orr-Sommerfeld, KdV, and Allen-Cahn equations.
http://web.comlab.ox.ac.uk/oucl/work/nick.trefethen/spectral.html

Holo
An interactive program which allows the user to visualize the affect of complex maps, especially, but not exclusively, those which are holomorphic.
http://math.rice.edu/~polking/holo.html

MATLAB Educational Web Sites
A large index of related sites.
http://www.eece.maine.edu/mm/matweb.html

Wavelets and Signal Processing Package for Matlab
[free] WaveLab is a library of MATLAB routines for wavelet analysis, wavelet-packet analysis, cosine-packet analysis and matching pursuit.
http://www-stat.stanford.edu/~wavelab

WAFO Wave Analysis for Fatigue and Oceanography
[free] A toolbox for statistical analysis and simulation of random waves and random loads.
http://www.maths.lth.se/matstat/wafo

The Test Matrix Toolbox
Contains a collection of test matrices, routines for visualizing matrices, and miscellaneous routines that provide useful additions to MATLAB's existing set of functions.
http://www.ma.man.ac.uk/~higham/testmat.html

BSTEX
[commercial] Equation Viewer for MATLAB. The equations typed for evaluation are automatically transformed to graphical Tex presentation.
http://www.geocities.com/bstex2001

SeismicLab
[free] Tools to read, write, and process SEGY data with MATLAB.
http://rubble.phys.ualberta.ca/~sacchi/SEISMIC_LAB/

Spatial Statistics Toolbox
[free] For estimating large-scale spatial autoregressions.
http://www.spatial-statistics.com/

UMFPACK
[free] A set of routines for solving unsymmetric sparse linear systems, Ax=b, using the Unsymmetric MultiFrontal method. Written in ANSI/ISO C, with a MATLAB interface.
http://www.cise.ufl.edu/research/sparse/umfpack/

Robotics Toolbox for MATLAB
[free] A public domain MATLAB Toolbox for robot kinematics, dynamics and control.
http://www.cat.csiro.au/cmst/staff/pic/robot/

OPTI-NUM solutions
Reseller of MATLAB, Simulink and related products in Southern Africa. Provides training, technical support, consulting and application development services.
http://www.optinum.co.za/

h2m
Functions for the EM estimation of mixtures and hidden Markov models.
http://www.tsi.enst.fr/~cappe/h2m

comp.soft-sys.matlab Newsgroup Access
This section of MATLAB Central provides web access to the public Usenet newsgroup comp.soft-sys.matlab, an independent, unmoderated forum.
http://newsreader.mathworks.com/

The Parallel Problems Server
MATLAB 5 front end to the Parallel Problems Server's computational engine. By using MATLAB 5's object oriented programming features, most server operations are completely transparent.
http://www.nersc.gov/~parry/text/ppserver/

JMatLink
[free] Connects Java and MATLAB. Native methods make it possible to use MATLAB's computational engine inside your own java applications, applets and servlets.
http://www.held-mueller.de/JMatLink/

Numerical Methods with MATLAB
A textbook for third and fourth year undergraduates in engineering and science.
http://www.me.pdx.edu/~gerry/nmm/

sendmail
Sending e-mail from MATLAB.
http://carol.wins.uva.nl/~portegie/matlab/sendmail/

The Schwarz-Christoffel Toolbox
Free distribution in ZIP archives.
http://www.math.udel.edu/~driscoll/software/

The Gravitational Radiation Analysis and Simulation Package
Includes the Gravitational Radiation Toolbox, which provides a MATLAB interface to both GRASP and the Frame Library.
http://www.lsc-group.phys.uwm.edu/~ballen/grasp-distribution/

VRMLplot
A function for generating interactive 3-D VRML graphs and animations.
http://www.dsl.whoi.edu/DSL/sayers/VRMLplot/

Programming in MATLAB
Documentation in text, PS and PDF.
http://space.tin.it/computer/gciabu/engl/matlab/matlab.htm

MatSeis
MatSeis is a seismic toolbox for MATLAB. It provides a time-distance profile plot integrating origin, waveform, travel-time, and arrival data. Graphical plot controls, data manipulation, and signal processing functions provide a user friendly seismic analysis package.
http://www.nemre.nn.doe.gov/nemre/data/matseis/matseis.html

Web-Enabled Access to University of Florida's Sparse Matrix Collection
Provide a simple method for downloading sparse test matrices from real applications into MATLAB.
http://www.cise.ufl.edu/research/sparse/mat

A Survey of Parallel MATLAB Projects
Divides projects into 4 approaches to providing parallel functionalities: Communication routines (MPI/PVM); Routines to split up work among multiple sessions; Parallel backend; Compiling into native parallel code.
http://supertech.lcs.mit.edu/~cly/survey.html

Math Forum: Search comp.soft-sys.matlab
Users of the software package Matlab may share tips and advice at the comp.soft-sys.matlab discussion list.
http://mathforum.org/discussions/epi-search/comp.soft-sys.matlab.html

PLECS - Simulating Power Electronic Systems with Simulink
Piece-wise Linear Electric Circuit Simulation is a Simulink blockset for the seamless integration of electrical or power electronic circuits into Simulink models.
http://www.eeh.ee.ethz.ch/plecs/

CallDll Toolbox
[commercial] Call DLLs directly without writing a MEX wrapper.
http://www.rndee.dk/calldll/index.html

Mathematical Exploration with MATLAB
By Ke Chen, Peter Giblin and Alan Irving (CUP, 1999). M-files and sample solutions.
http://www.liv.ac.uk/maths/ETC/matbook/

Mathtools.net
MATLAB Portal with links to toolboxes and other resources. Requires Javascript; free registration.
http://www.mathtools.net/MATLAB

epsTk
Provides, via a set of .m functions, a toolkit to create powerful encapsulated postscript (.eps) graphs. Most 2D scientific graphics functions are written. The generated .eps-files are very small and can be imported into other documents without loss of quality.
http://www.epstk.de/

Google Toolbox
Uses Google's SOAP interface to pull data into MATLAB as a structure.
http://www.mathworks.com/matlabcentral/fileexchange/Files.jsp?fileId=1613

SOSTOOLS
A free sum of squares optimization toolbox for MATLAB.
http://www.aut.ee.ethz.ch/~parrilo/sostools/

MATLAB Programming Contest - molecule
See the results of the fifth contest held in May 2002.
http://www.mathworks.com/contest/molecule.cgi

The Cerveau Cafe
User submitted Matlab benchmarks. Lists information comparing different types of hardware with program performance.
http://www.tiger-marmalade.com/~yash/demo/benchmark.html

GPS Signal Simulation Toolbox
[commercial] A set of GPS signal simulation, test, and analysis tools.
http://www.navsys.com/Products/toolbox.htm

ARfit: Fitting Multivariate Autoregressive Models
MATLAB functions for estimating parameters of multivariate autoregressive (AR) models, diagnostic checking of fitted AR models, and analyzing eigenmodes of fitted AR models.
http://www.gps.caltech.edu/~tapio/arfit/

SEGYMAT
Read and write SEGY data.
http://segymat.sourceforge.net/

Netlab Toolbox
[free] MATLAB software for neural networks and other pattern recognition algorithms. Special features include Bayesian methods, Gaussian Processes and visualisation.
http://www.ncrg.aston.ac.uk/netlab

Tutorial for Control System Toolbox
By Finn Haugen, Telemark College and TechTeach.
http://www.techteach.no/publications/control_toolbox_matlab/cst4.htm

MATLAB Depot
A collection of M-files for linear algebra maintained by Michael Tsatsomeros at Washington State University.
http://www.math.wsu.edu/math/faculty/tsat/matlab.html

A Practical Introduction to MATLAB
An introduction to some of the most useful features of MATLAB, including plenty of examples.
http://www.math.mtu.edu/~msgocken/intro/intro.html

Print Shop
[commercial] This report generator allows the user to produce reports in the PDF format directly from MATLAB.
http://www.2-control.com/software/matlab/printshop/index.html

Sounds Logical's M-Utilities
[commercial] A collection of useful MATLAB "utility" functions including the following: a "winuigetfolder" function, an open browser function, a hard-disk size query function, and a range of window manipulation functions.
http://www.soundslogical.com/products/mpacks/mpacku_intro.html

TfMin: Minimum time orbit transfer
A Fortran and MATLAB package designed for the numerical solution of continuous 3D minimum time orbit transfer around the Earth.
http://www.enseeiht.fr/lima/apo/tfmin/

Regularized EM algorithm for analysis of incomplete datasets
A regularized expectation-maximization (EM) algorithm for the estimation of mean values and covariance matrices and for the imputation of missing values in large, incomplete datasets.
http://www.gps.caltech.edu/~tapio/imputation/

Podium Technology
Specialises in producing tools for MATLAB/Simulink that enhance their use in generating control systems for embedded control units and their application tools.
http://www.podiumtechnology.co.uk/

Modal Control and LFTs
Two toolboxes for use with MATLAB: the Robust Modal Control Toolbox and the Linear Fractional Representation Toolbox.
http://www.cert.fr/fr/dcsd/IDCO/IDCOPUB/perso/Magni/booksandtb.html

Octave Home Page
GNU Octave is freely redistributable software that provides a command line interface for solving linear and nonlinear problems numerically. GNU Octave is mostly compatible with MATLAB.
http://www.octave.org

Structural Dynamics Toolbox
Provides extensions linked to general 3-D finite element modelling, experimental modal analysis and test/analysis correlation.
http://www.sdtools.com/sdt/

OpenFEM
A finite element toolbox.
http://www.openfem.net/

SDT FEMLink
Provides bidirectional interfaces with a number of finite element file formats.
http://www.sdtools.com/femlink.html

EigTool
[free] A GUI (Graphical User Interface) that integrates MATLAB's eigs routine (ARPACK) for finding a few eigenvalues of a large sparse matrix with the (now obsolete) Pseudospectra GUI for computing pseudospectra of matrices.
http://web.comlab.ox.ac.uk/projects/pseudospectra/eigtool/

PNM Toolbox
Read and write PPM (portable pixelmap), PGM (portable graymap), PBM (portable bitmap) and XBM (X11 bitmap) image files. A few other image processing and conversion tools are also included.
http://home.online.no/~pjacklam/matlab/software/pnm/

GETFEM++
A generic and efficient C++ library for finite element methods elementary computations with a MATLAB interface.
http://www.gmm.insa-tlse.fr/getfem/

Regression Toolbox for Matlab
This Toolbox consists of a collection of m-files for implementing basic multivariate data analysis and regression.
http://www.control.hut.fi/Hyotyniemi/publications/01_report125/RegrToolbox/

SOM Toolbox for Matlab
SOM Toolbox is a software library for Matlab 5 (version 5.2 at least) implementing the Self-Organizing Map (SOM) algorithm.
http://www.cis.hut.fi/projects/somtoolbox/

Scientific/Educational MATLAB Database
Database of educational or scientific MATLAB m-files in Mathematics and Engineering, maintained by the University of Stuttgart, Germany.
http://matlabdb.mathematik.uni-stuttgart.de

Design and Analysis of Computer Experiments
Toolbox for working with kriging approximations to computer models. Includes zip download and reference file in pdf format.
http://www.imm.dtu.dk/~hbn/dace/

The Matrix Computation Toolbox
[free] A collection of MATLAB M-files containing functions for constructing test matrices, compu


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